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["Table S7 DEGs of NBS-LRR family in six RNA-Seq data"]
["#ID","L01","L02","L03","L04","L05","L06","KOG_class","KOG_class_annotation","Swiss-Prot_annotation","eggNOG_class","eggNOG_class_annotation","NR_annotation"]
["Cotton_newGene_11281",0.104603,0,4.229747,3.820533,0.255574,0.162814,"--","--","Probable disease resistance protein At4g33300 GN=At4g33300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","R","General function prediction only","Nbs-lrr resistance protein isoform 3 [Theobroma cacao] "]
["Cotton_newGene_20072",1.572407,1.228509,0.709317,0.934779,1.413904,0.942358,"[T]","Signal transduction mechanisms","Probable disease resistance protein At4g27220 GN=At4g27220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","Nbs-lrr resistance protein [Theobroma cacao] "]
["Cotton_newGene_21646",0.493504,0.542767,0.771689,0.380293,0.555388,0.319832,"[T]","Signal transduction mechanisms","Putative disease resistance protein At4g10780 GN=At4g10780 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","Nbs-lrr resistance protein isoform 1 [Theobroma cacao] "]
["Cotton_newGene_21653",0.373599,0.483825,0.84033,0.346302,0.778017,0.906971,"[T]","Signal transduction mechanisms","Probable disease resistance protein At4g27220 GN=At4g27220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","Nbs-lrr resistance protein isoform 1 [Theobroma cacao] "]
["Cotton_newGene_21688",0.558014,0.856249,0.739853,0.323014,0.772591,0.229546,"[T]","Signal transduction mechanisms","Probable disease resistance protein At4g27220 GN=At4g27220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","Nbs-lrr resistance protein [Theobroma cacao] "]
["Cotton_newGene_35652",1.019299,0.491136,0.474791,0.72109,0.970189,1.085152,"[T]","Signal transduction mechanisms","Probable disease resistance protein At1g61180 GN=At1g61180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","T","Signal transduction mechanisms","Nbs-lrr resistance protein [Theobroma cacao] "]
["Cotton_newGene_37019",1.461614,0.627392,0.660615,1.564314,1.646519,1.594937,"[T]","Signal transduction mechanisms","Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","T","Signal transduction mechanisms","CC-NBS-LRR class disease resistance protein [Theobroma cacao] "]
["Cotton_newGene_3985",0.065671,0.290933,0.387207,0.27005,0.585254,0.488539,"[T]","Signal transduction mechanisms","Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","T","Signal transduction mechanisms","CC-NBS-LRR class disease resistance protein, putative [Theobroma cacao] "]
["Cotton_newGene_3994",0.629658,0.559728,1.279839,0.556187,0.772795,0.812704,"[T]","Signal transduction mechanisms","Probable disease resistance protein At1g58390 GN=At1g58390 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=4","T","Signal transduction mechanisms","CC-NBS-LRR class disease resistance protein, putative [Theobroma cacao] "]
["Cotton_newGene_9486",1.800176,2.232953,2.661383,1.340677,1.320489,2.787675,"[T]","Signal transduction mechanisms","Probable disease resistance protein At1g12290 GN=At1g12290 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein, putative [Theobroma cacao] "]
["evm.TU.Gh_A01G0316",1.710543,1.137033,1.051309,0.662481,1.287977,0.472818,"--","--","Probable disease resistance protein At1g61300 GN=At1g61300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein, putative [Theobroma cacao] "]
["evm.TU.Gh_A01G0548",0.069904,0.195361,0.049072,0.093954,0.228267,0.141504,"[T]","Signal transduction mechanisms","Disease resistance RPP13-like protein 4 GN=RPP13L4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","T","Signal transduction mechanisms","Nbs-lrr resistance protein, putative isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A03G1272",3.269373,2.202481,1.961911,3.74437,4.508708,3.885711,"--","--","TMV resistance protein N GN=N OS=Nicotiana glutinosa (Tobacco) PE=1 SV=1","T","Signal transduction mechanisms","Tir-nbs-lrr resistance protein, putative isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A05G3970",0.325984,0.251597,0.44229,0.258299,0.125094,0.348348,"[T]","Signal transduction mechanisms","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","CC-NBS-LRR domain protein [Gossypium hirsutum]"]
["evm.TU.Gh_A08G1378",0.454722,0.29054,0.12393,0.113598,0.477238,0.047017,"--","--","Putative disease resistance protein At4g19050 GN=At4g19050 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","R","General function prediction only","Nbs-lrr resistance-like protein [Theobroma cacao] "]
["evm.TU.Gh_A10G0554",0.49295,1.476116,0.538418,0.999057,0.063833,0.241291,"[T]","Signal transduction mechanisms","Putative disease resistance protein RGA4 GN=RGA4 OS=Solanum bulbocastanum (Wild potato) PE=2 SV=1","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein, putative isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A12G0912",0.741533,0.847455,1.558252,0.707763,0.635219,0.922382,"[T]","Signal transduction mechanisms","Putative disease resistance RPP13-like protein 1 GN=RPPL1 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein, putative isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A12G1865",0.140679,0.076615,0.460559,0.332033,0.736482,0.988576,"[T]","Signal transduction mechanisms","Disease resistance protein RPM1 GN=F17A9.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","Nbs-lrr resistance protein, putative [Theobroma cacao] "]
["evm.TU.Gh_D01G0174",0,0.094735,0,0.094662,0.408974,0,"[T]","Signal transduction mechanisms","Probable disease resistance protein At1g61310 GN=At1g61310 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","NBS-LRR type disease resistance protein [Theobroma cacao] "]
["evm.TU.Gh_D01G0348",2.877199,0.479063,2.307514,2.407388,0.307281,3.220018,"--","--","Disease resistance protein RPS2 GN=RPS2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein [Theobroma cacao] "]
["evm.TU.Gh_D01G0349",4.122343,0,8.684982,5.681491,0.00463,9.472222,"--","--","Disease resistance protein RPS2 GN=RPS2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein [Theobroma cacao] "]
["evm.TU.Gh_D02G1713",4.126844,2.533896,1.799658,2.783526,3.9958650000000002,2.390075,"--","--","TMV resistance protein N GN=N OS=Nicotiana glutinosa (Tobacco) PE=1 SV=1","T","Signal transduction mechanisms","Tir-nbs-lrr resistance protein, putative isoform 3 [Theobroma cacao] "]
["evm.TU.Gh_D05G0053",0.316878,0.165119,0.087408,0.190923,0.213018,0.097207,"[T]","Signal transduction mechanisms","Late blight resistance protein R1-A GN=R1A OS=Solanum demissum (Wild potato) PE=3 SV=1","T","Signal transduction mechanisms","CC-NBS-LRR domain protein [Gossypium hirsutum]"]
["evm.TU.Gh_D05G2487",7.27029,5.714138,9.958739,8.050758,12.958837,12.363131,"--","--","Probable disease resistance protein At4g33300 GN=At4g33300 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=3","R","General function prediction only","Nbs-lrr resistance protein isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D05G3548",0.128529,0.321363,0.50998,0.191947,0.51968,0.751565,"[T]","Signal transduction mechanisms","Disease resistance protein At4g27190 GN=At4g27190 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein [Theobroma cacao] "]
["evm.TU.Gh_D06G2323",0.089429,0.099453,0.061899,0,0,0.280883,"[T]","Signal transduction mechanisms","Putative disease resistance protein RGA1 GN=RGA1 OS=Solanum bulbocastanum (Wild potato) PE=2 SV=2","T","Signal transduction mechanisms","Nbs-lrr resistance protein, putative [Theobroma cacao] "]
["evm.TU.Gh_D08G1673",0.14896,0.095075,0.065279,0.100578,0.17946,0.055568,"--","--","Putative disease resistance protein At4g19050 GN=At4g19050 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","R","General function prediction only","Nbs-lrr resistance-like protein [Theobroma cacao] "]
["evm.TU.Gh_D09G0350",0.34537,0.572845,1.114463,0.506856,0.666261,0.826011,"[T]","Signal transduction mechanisms","Putative disease resistance protein RGA3 GN=RGA3 OS=Solanum bulbocastanum (Wild potato) PE=2 SV=2","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein, putative isoform 2 [Theobroma cacao] "]
["evm.TU.Gh_D10G0712",0.988913,0,1.199688,0.605356,0.846287,0.996565,"[T]","Signal transduction mechanisms","Probable disease resistance protein At1g12280 GN=At1g12280 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein, putative [Theobroma cacao] "]
["evm.TU.Gh_D10G2275",0.063745,0,0.36768,0.189405,0,0,"[T]","Signal transduction mechanisms","Disease resistance protein RPM1 GN=F17A9.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein, putative [Theobroma cacao] "]
["evm.TU.Gh_D11G2941",0.393855,0.215199,0.187138,0.081636,0.053158,1.182521,"[T]","Signal transduction mechanisms","Probable disease resistance protein At4g27220 GN=At4g27220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","Nbs-lrr resistance protein [Theobroma cacao] "]
["evm.TU.Gh_D11G2948",0.008146,0.285949,0.022737,1.226134,0.003929,0.133403,"[T]","Signal transduction mechanisms","Disease resistance RPP8-like protein 3 GN=RPP8L3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","CC-NBS-LRR class disease resistance protein [Theobroma cacao] "]
["evm.TU.Gh_D11G2949",2.989002,1.692157,1.338796,3.198175,2.985819,3.277665,"[T]","Signal transduction mechanisms","Putative disease resistance protein At1g50180 GN=At1g50180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","T","Signal transduction mechanisms","CC-NBS-LRR class disease resistance protein, putative [Theobroma cacao] "]
["evm.TU.Gh_D11G2950",0.389659,0.129799,0.201872,0.385243,0.364646,0.318981,"[T]","Signal transduction mechanisms","Disease resistance protein RPH8A GN=RPH8A OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","T","Signal transduction mechanisms","CC-NBS-LRR class disease resistance protein, putative [Theobroma cacao] "]
["evm.TU.Gh_D12G2037",0.049041,0.170847,0.161955,0.264091,0.110292,0.239023,"[T]","Signal transduction mechanisms","Disease resistance protein RPM1 GN=F17A9.20 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","Nbs-lrr resistance protein, putative [Theobroma cacao] "]
["evm.TU.Gh_Sca004820G01",2.119079,0,3.056102,2.782073,0,3.480102,"[T]","Signal transduction mechanisms","Disease resistance protein RPS2 GN=RPS2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein [Theobroma cacao] "]
["evm.TU.Gh_Sca004820G02",10.96069,0,0.065118,0.065128,0.02381,0.066194,"--","--","--","T","Signal transduction mechanisms","Cc-nbs-lrr resistance protein, putative [Theobroma cacao] "]
["evm.TU.Gh_Sca004942G02",0.117815,0.087554,0.244127,0.055301,0.052287,0.099587,"[T]","Signal transduction mechanisms","Probable disease resistance protein At4g27220 GN=At4g27220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","Nbs-lrr resistance protein isoform 2 [Theobroma cacao] "]
["evm.TU.Gh_Sca018101G01",0.459411,0.343135,0.967388,0.470068,0.486095,0.654394,"[T]","Signal transduction mechanisms","Disease resistance protein At4g27190 GN=At4g27190 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","T","Signal transduction mechanisms","Nbs-lrr resistance protein [Theobroma cacao] "]